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Species belonging to selected taxon:
Vitis vinifera
ABOUT THIS RECORD
ID:
MNEST041684
species:
Vitis vinifera
miRNA family:
MIR477
source:
miRBase, original name:
vvi-MIR447b
(
MI0016025
)
Taxonomy by NCBI:
Vitis vinifera
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTCTTTCTCAAGGGCTTCTAG
miRNA*
CGAAGTCTTTGGGGAGAGTGG
mismatches:
3
bulges:
1
View larger
pre-miRNA
GCCAACACGAGGCATTTCTATTGCTC
ACTCTTTCTCAAGGGCTTCTAG
CATTGCCAGTAACAAAATGGCAAGCT
CGAAGTCTTTGGGGAGAGTGG
ACAAA
CGTTGTCTCGAATATGC
dot-bracket secondary structure
.......(((((((......(((..(
(((((..(.((((((((((.((
(.((((((.........)))))))))
.)))))))))))..)))))).
.))).
...))))))).......
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
MIR473: 1e-38
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J,
Plant J. 62:960-976(2010).
,
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"